Egypt Covid-19 Information

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An Insight on live data of Egypt

Arpan Sarkar
09-16-2021
EGYPT

Effect of Covid-19 in Egypt: an Instant Insight

Figure 1: Covid-19 confirmed and death cases distribution

Figure 2: month wise total figures

Top 5 days of highest covid cases
Egypt
date new_cases new_deaths
2020-06-19 1774 79
2020-06-15 1691 97
2020-06-13 1677 62
2020-06-26 1625 87
2020-06-14 1618 91
Source:https://github.com/joachim-gassen/tidycovid19
Table 1: Covid19 situation in middle-east countries
Rank country New_cases death_rate death_rank population total_vaccinations population_rank Vax_Percentage
1 Iran 4960744 2.160 6 83992953.00 27057253 2 16.107
2 Iraq 1881213 1.104 15 40222503.00 3368843 4 4.188
3 Israel 1061488 0.664 17 9216900.00 13618759 11 73.879
4 Morocco 856049 1.465 8 36910558.00 NA 5 NA
5 Jordan 796259 1.306 13 10203140.00 NA 9 NA
6 UAE 717374 0.284 20 9890400.00 18095160 10 91.478
7 Tunisia 662752 3.535 4 11818618.00 5683733 8 24.046
8 Lebanon 601226 1.339 11 6825442.00 2435581 13 17.842
9 Saudi Arabia 543318 1.567 7 34813867.00 36837337 6 52.906
10 Kuwait 409736 0.590 18 4270563.00 NA 16 NA
11 PSE 339816 1.081 16 4803269.00 1340889 15 13.958
12 Libya 307471 1.370 9 6871287.00 NA 12 NA
13 Oman 302239 1.344 10 5106622.00 3752420 14 36.741
14 Egypt 288162 5.805 3 102334403.00 10769834 1 5.613
15 Bahrain 272453 0.509 19 1701583.00 2485464 18 73.034
16 Qatar 232571 0.259 21 2881060.00 NA 17 NA
17 Algeria 195574 2.679 5 43851043.00 NA 3 NA
18 Malta 36123 1.218 14 525285.00 796333 19 75.800
19 Syria 27779 7.225 2 2807.00 403254 20 1.152
20 Djibouti 11747 1.337 12 1343.27 NA 21 NA
21 Yemen 7829 18.764 1 29825968.00 NA 7 NA

Figure 3: vaccination coverage

Figure 4: Death Cases Month Wise

Vaccine, the Real Solution for Covid-19- Is the pace Right in Egypt?

It is of importance for something that is as relevant as it deserves.
With knowledge and experience to deal with Covid-19, the solution that we have now with us, to protect human lives is the Vaccine. Although the protective habits like use of mask, sanitization and maintaining physical distance etc. are still important and statutorily should be maintained, but the global focus is now on inoculation. The horizontal bar chart shows the inoculation status of Egypt since March 2021 to 13 September 2021. The graph shows month wise vaccination percentage, with provision of showing the exact figure by putting the cursor on the bar (tool tip figure). The percentage figure was abysmally low (0.08%) in March ’21 and then rose to 4.271% in August ’21. September ’21 till 13th, the figure (5.613%) is very encouraging.

The revelations are very important. The trend is not much different from other nations, where the vaccine hesitation was a major concern to raise the tempo. Here also it caught the speed gradually but always on increasing note. But the difference that is visible with other major middle east nations like, UAE, Malta, Israel, Bahrain, Saudi Arabia, Oman etc. is the percentage of inoculation. In Egypt it is far less than 10% of population being inoculated till date, whereas the figure for UAE is as high as more than 91% (see the table data). The total population of Egypt is more than 10 times of UAE, is also a point to be noted. However, the reasons for low pace of vaccination could be due to:

To authenticate the fact that, the more is the vaccination, the less will be fatality rate, see above 2 bar plots 3 and 4. The graph reveals that post May2-021, fatal cases are on a steady decline while vaccination figures are on the rise as shown in 3.

References

  1. Wickham et al., (2019). Welcome to the tidyverse. Journal of Open Source Software, 4(43), 1686, https://doi.org/10.21105/joss.01686

  2. Joachim Gassen (2021). tidycovid19: Download, Tidy and Visualize Covid-19 Related Data. R package version 0.0.0.9000.

  3. Achim Zeileis and Gabor Grothendieck (2005). zoo: S3 Infrastructure for Regular and Irregular Time Series. Journal of Statistical Software, 14(6), 1-27. doi:10.18637/jss.v014.i06

  4. C. Sievert. Interactive Web-Based Data Visualization with R, plotly, and shiny. Chapman and Hall/CRC Florida, 2020.

  5. Thomas Lin Pedersen (2021). ggforce: Accelerating ‘ggplot2’. R package version 0.3.3. https://CRAN.R-project.org/package=ggforce

  6. Thomas Lin Pedersen (2020). patchwork: The Composer of Plots. R package version 1.1.1. https://CRAN.R-project.org/package=patchwork

  7. Claus O. Wilke (2020). ggtext: Improved Text Rendering Support for ‘ggplot2’. R package version 0.1.1. https://CRAN.R-project.org/package=ggtext

  8. Ramnath Vaidyanathan, Kent Russell and Gareth Watts (2016). sparkline: ‘jQuery’ Sparkline ‘htmlwidget’. R package version 2.0. https://CRAN.R-project.org/package=sparkline

  9. Yihui Xie, Joe Cheng and Xianying Tan (2021). DT: A Wrapper of the JavaScript Library ‘DataTables’. R package version 0.18. https://CRAN.R-project.org/package=DT

  10. Dominic Comtois (2021). summarytools: Tools to Quickly and Neatly Summarize Data. R package version 1.0.0. https://CRAN.R-project.org/package=summarytools

  11. Joshua Kunst (2020). highcharter: A Wrapper for the ‘Highcharts’ Library. R package version 0.8.2. https://CRAN.R-project.org/package=highcharter

  12. Hao Zhu (2021). kableExtra: Construct Complex Table with ‘kable’ and Pipe Syntax. R package version 1.3.4. https://CRAN.R-project.org/package=kableExtra

  13. Garrett Grolemund, Hadley Wickham (2011). Dates and Times Made Easy with lubridate. Journal of Statistical Software, 40(3), 1-25. URL https://www.jstatsoft.org/v40/i03/.